Info • Phyllosticta citribraziliensis CBS 100098 v1.0

Status

[January 2017] The Phyllosticta citribraziliensis CBS 100098 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta citribraziliensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.67
Sequencing read coverage depth 264.15x
# of contigs 32
# of scaffolds 32
# of scaffolds >= 2Kbp 32
Scaffold N50 7
Scaffold L50 (Mbp) 1.72
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.52, 2.59, 2.41


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36574 35672 97.5%
Ests est.fasta 82792334 79518196 96.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1638 1395
transcript 1486 1254
exon 536 336
intron 88 58
description:
protein length (aa) 427 344
exons per gene 2.77 2
# of gene models 11101


Collaborators

Pedro Crous, CBS-KNAW, The Netherlands.

Joseph Spatafora, Oregon State University, USA

Francis M. Martin, INRA, France.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Guarnaccia V, Gehrmann T, Silva-Junior GJ, Fourie PH, Haridas S, Vu D, Spatafora J, Martin FM, Robert V, Grigoriev IV, Groenewald JZ, Crous PW
Phyllosticta citricarpa and sister species of global importance to Citrus.
Mol Plant Pathol. 2019 Dec;20(12):1619-1635. doi: 10.1111/mpp.12861

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.