Info • Penicillium bilaiae ATCC 20851 v1.0

Status

June 2013. The Penicillium bilaiae genome was sequenced using Illumina technology and assembled using AllPathsLG version R44849. Subsequently it was annotated using the JGI annotation pipeline and custom analyses.

Summary statistics for the Penicillium bilaiae ATCC 20851 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.54
Sequencing read coverage depth 101x
# of contigs 319
# of scaffolds 132
# of scaffolds >= 2Kbp 110
Scaffold N50 11
Scaffold L50 (Mbp) 1.22
# of gaps 187
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 2.55, 2.20, 2.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters CombestEstClusters 63078 62677 99.4%
Other EST_assemblies 32727 30244 92.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1704 1500
transcript 1534 1342
exon 515 316
intron 87 65
description:
protein length (aa) 437 370
exons per gene 2.98 3
# of gene models 13606


Collaborators

Dave Greenshields, Novozymes

Keith Seifert, Agriculture and Agri-Food Canada

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.