Parasitella parasitica v1.0
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Status

[Feb 2016] The Parasitella parasitica NRRL 2501 genome was sequenced using the Illumina platform and assembled together with AllPathsLG release version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Parasitella parasitica NRRL 2501 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.77
Sequencing read coverage depth 91x
# of contigs 1555
# of scaffolds 450
# of scaffolds >= 2Kbp 348
Scaffold N50 54
Scaffold L50 (Mbp) 0.20
# of gaps 1105
% of scaffold length in gaps 4.1%
Three largest Scaffolds (Mbp) 0.58, 0.51, 0.49


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30798 29491 95.8%
Ests est.fasta 93327640 91847214 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1542 1280
transcript 1339 1096
exon 354 204
intron 75 62
description:
protein length (aa) 396 316
exons per gene 3.79 3
# of gene models 12306


Collaborators

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State, Oregon

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.