Status
This genome was sequenced by R. Scott Cornman, Yan Ping Chen, Michael C. Schatz, Craig Street et al. in USDA-ARS Bee Research Lab, Beltsville, Maryland, United States of America (Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees.)
Summary statistics for the Nosema ceranae BRL01 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 7.86 |
| Sequencing read coverage depth | 24.2x |
| # of contigs | 5465 |
| # of scaffolds | 5465 |
| # of scaffolds >= 2Kbp | 639 |
| Scaffold N50 | 470 |
| Scaffold L50 (Mbp) | 0.00 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.07, 0.06, 0.04 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 982 | 771 |
| transcript | 982 | 771 |
| exon | 979 | 768 |
| intron | 28 | 27 |
| description: | ||
| protein length (aa) | 327 | 257 |
| exons per gene | 1.00 | 1 |
| # of gene models | 2060 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, Desany B, Egholm M, Hutchison S, Pettis JS, Lipkin WI, Evans JD
Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees.
PLoS Pathog. 2009 Jun;5(6):e1000466. doi: 10.1371/journal.ppat.1000466
Chen YP, Evans JD, Murphy C, Gutell R, Zuker M, Gundensen-Rindal D, Pettis JS
Morphological, molecular, and phylogenetic characterization of Nosema ceranae, a microsporidian parasite isolated from the European honey bee, Apis mellifera.
J Eukaryot Microbiol. 2009 Mar-Apr;56(2):142-7. doi: 10.1111/j.1550-7408.2008.00374.x
Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, Desany B, Egholm M, Hutchison S, Pettis JS, Lipkin WI, Evans JD
Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees.
PLoS Pathog. 2009 Jun;5(6):e1000466. doi: 10.1371/journal.ppat.1000466
Chen YP, Evans JD, Murphy C, Gutell R, Zuker M, Gundensen-Rindal D, Pettis JS
Morphological, molecular, and phylogenetic characterization of Nosema ceranae, a microsporidian parasite isolated from the European honey bee, Apis mellifera.
J Eukaryot Microbiol. 2009 Mar-Apr;56(2):142-7. doi: 10.1111/j.1550-7408.2008.00374.x
Funding
This project was not sequenced at the JGI.
