Info • Myriangiaceae sp. NC1570 v1.0

Status

[December 2018] The Myriangiaceae sp. NC1570 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Myriangiaceae sp. NC1570 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 24.77
Sequencing read coverage depth 176.69x
# of contigs 26
# of scaffolds 26
# of scaffolds >= 2Kbp 24
Scaffold N50 7
Scaffold L50 (Mbp) 1.52
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.59, 2.25, 2.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 18817 18593 98.8%
Ests est.fasta 108897410 78463802 72.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1776 1522
transcript 1682 1435
exon 687 421
intron 67 56
description:
protein length (aa) 476 385
exons per gene 2.45 2
# of gene models 9767


Collaborators

Jana U'Ren, University of Arizona, AZ

Betsy Arnold, University of Arizona, AZ

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.