Status
[May 2015] The Myceliophthora heterothallica CBS 203.75 (mating type A) genome was sequenced using Illumina and assembled using AllPathsLG (Gnerre et al. 2010).
Summary statistics for the Myceliophthora heterothallica
CBS 203.75 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.36 |
| Sequencing read coverage depth | 132.8 |
| # of contigs | 547 |
| # of scaffolds | 37 |
| # of scaffolds >= 2Kbp | 25 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 4.40 |
| # of gaps | 510 |
| % of scaffold length in gaps | 0.7% |
| Three largest Scaffolds (Mbp) | 5.21, 4.73, 4.58 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 34560 | 34047 | 98.5% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1820 | 1560 |
| transcript | 1628 | 1372 |
| exon | 590 | 353 |
| intron | 111 | 79 |
| description: | ||
| protein length (aa) | 449 | 359 |
| exons per gene | 2.76 | 2 |
| # of gene models | 10061 |
Collaborators
Don Natvig, University of New Mexico
Amy Powell, Sandia National Laboratories
Links
Sordariomycetes homepage on Mycocosm
Natvig laboratory at University of New Mexico
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
