Info • Mortierella sp. GBAus27b v1.0

Status

[May 2017] The Mortierella sp. GBAus27b genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. The bacterial endosymbiont was separated out after assembly.

Summary statistics for the Mortierella sp. GBAus27b v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.97
Sequencing read coverage depth 77.32x
# of contigs 140
# of scaffolds 140
# of scaffolds >= 2Kbp 138
Scaffold N50 15
Scaffold L50 (Mbp) 0.82
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.98, 2.19, 2.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41151 35847 87.1%
Ests est.fasta 112897033 112176093 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1936 1649
transcript 1584 1308
exon 441 239
intron 138 101
description:
protein length (aa) 468 373
exons per gene 3.59 3
# of gene models 13953


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience. 2022 Aug 19;25(8):104840. doi: 10.1016/j.isci.2022.104840

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.