Info • Meliniomyces variabilis F v1.0

Status

Assembly v1 (September 2012) is a draft assembly of Solexa gDNA reads. A total of 93 scaffolds and 55.9 Mbp were assembled using AllPathsLG.

Summary statistics for the Meliniomyces variabilis F v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 55.86
Sequencing read coverage depth 108.4x
# of contigs 272
# of scaffolds 93
# of scaffolds >= 2Kbp 83
Scaffold N50 11
Scaffold L50 (Mbp) 2.14
# of gaps 179
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.90, 2.87, 2.86


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 44883 43252 96.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1663 1442
transcript 1496 1290
exon 493 311
intron 84 56
description:
protein length (aa) 440 368
exons per gene 3.04 3
# of gene models 20389


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Martino E, Morin E, Grelet GA, Kuo A, Kohler A, Daghino S, Barry KW, Cichocki N, Clum A, Dockter RB, Hainaut M, Kuo RC, LaButti K, Lindahl BD, Lindquist EA, Lipzen A, Khouja HR, Magnuson J, Murat C, Ohm RA, Singer SW, Spatafora JW, Wang M, Veneault-Fourrey C, Henrissat B, Grigoriev IV, Martin FM, Perotto S
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists.
New Phytol. 2018 Feb;217(3):1213-1229. doi: 10.1111/nph.14974

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.