Meliniomyces variabilis F v1.0

Status

Assembly v1 (September 2012) is a draft assembly of Solexa gDNA reads. A total of 93 scaffolds and 55.9 Mbp were assembled using AllPathsLG.

Summary statistics for the Meliniomyces variabilis F v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 55.86
Sequencing read coverage depth 108.4x
# of contigs 272
# of scaffolds 93
# of scaffolds >= 2Kbp 83
Scaffold N50 11
Scaffold L50 (Mbp) 2.14
# of gaps 179
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.90, 2.87, 2.86


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 44883 43252 96.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1663 1442
transcript 1496 1290
exon 493 311
intron 84 56
description:
protein length (aa) 440 368
exons per gene 3.04 3
# of gene models 20389


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.