Meliniomyces bicolor E v2.0
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Status

Assembly v2 (January 2013) is an improved assembly of 206 scaffolds and 82.4 Mbp. Solexa gDNAs were assembled using AllPathsLG and gaps were filled with PacBio gDNAs using PBJelly and AllPathsLG module LongReadPostPatcher.

Summary statistics for the Meliniomyces bicolor E v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 82.38
Sequencing read coverage depth 190.6x
# of contigs 301
# of scaffolds 206
# of scaffolds >= 2Kbp 123
Scaffold N50 14
Scaffold L50 (Mbp) 1.98
# of gaps 95
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 6.47, 4.49, 3.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 37995 37035 97.5%


Gene Models FilteredModels2
length (bp) of: average median
gene 1637 1382
transcript 1461 1225
exon 494 309
intron 92 57
description:
protein length (aa) 422 342
exons per gene 2.96 2
# of gene models 18619


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.