Info • Martensiomyces pterosporus CBS 209.56 v1.0

Status

Assembly v1 (September 2014) is a minimal draft assembly. A total of 529 scaffolds and 19.8 Mbp were assembled from Illumina gDNAs using Velvet and then AllPathsLG.

Summary statistics for the Martensiomyces pterosporus CBS 209.56 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.82
Sequencing read coverage depth 115.7x
# of contigs 1156
# of scaffolds 529
# of scaffolds >= 2Kbp 444
Scaffold N50 51
Scaffold L50 (Mbp) 0.12
# of gaps 627
% of scaffold length in gaps 2.8%
Three largest Scaffolds (Mbp) 0.32, 0.30, 0.30


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 15525 13148 84.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1534 1212
transcript 1392 1101
exon 874 606
intron 242 137
description:
protein length (aa) 407 309
exons per gene 1.59 1
# of gene models 8435


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.