Lottia gigantea
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Status

v1.0 (July 24, 2007): This Lottia gigantea genome sequence was assembled using the JGI assembler, Jazz, constructed from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence from the finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses, reported here as the Lotgi1 annotation.

Summary statistics for the 1.0 release (Lotgi1):

Nuclear Genome Assembly
Lotgi1
Nuclear genome size (Mbp)
359.5
Sequencing read coverage depth
8.87x
Reported # of contigs
20,146
# of nuclear scaffolds
4,475
# of nuclear scaffolds >2 Kbp
2,631
Nuclear scaffold N/L50
51/1.87 Mbp
Three largest Scaffolds (Mbp)
9.4
7.1
6.4

 

Gene Models
Lotgi11
length (bp) of:
average
gene
5,234
transcript
1,286
exon
213
intron
787
description:
protein length (aa)
378
exons per gene
6.0
# of gene models
23,851

[1] FilteredModels Version1.0 gene model track

 

ESTs
Data set
# sequences total
# mapped to genome
# not mapped to genome
% mapped to genome
EST clusters
EstClusters_naClusterCr705LottiaJgi20060727
38,599
35,832
2,767
93%
ESTs
Ests_naEstLottiaJgi20060727
252,091
231,940
20,151
92%

 

Collaborators

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program and the by the University of California, Lawrence Livermore National Laboratory under Contract No. W-7405-Eng-48, Lawrence Berkeley National Laboratory under contract No. DE-AC03-76SF00098 and Los Alamos National Laboratory under contract No. W-7405-ENG-36.