Linderina pennispora ATCC 12442 v1.0
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Status

[Sept 2015] The Linderina pennispora ATCC 12442 genome was sequenced with PacBio and assembled with Falcon version 20150720 followed by FinisherSC. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Linderina pennispora ATCC 12442 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 26.20
Sequencing read coverage depth
# of contigs 227
# of scaffolds 227
# of scaffolds >= 2Kbp 226
Scaffold N50 9
Scaffold L50 (Mbp) 0.91
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.30, 1.73, 1.71


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 15446 14471 93.7%


Gene Models GeneCatalog_2015_09_14_14_07
length (bp) of: average median
gene 1443 1155
transcript 1323 1072
exon 572 353
intron 93 48
description:
protein length (aa) 386 300
exons per gene 2.31 1
# of gene models 9351


Collaborators

Dr. Tim Y. James, University of Michigan, USA

Dr. Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.