Info • Leiotrametes sp. CIRM-BRFM 1775 v1.0

Status

Nov 2014. The Leiotrametes sp. BRFM 1775 genome was sequenced using Illumina technology and assembled with AllPathsLG release version R46652.

Summary statistics for the Leiotrametes sp BRFM 1775 v1.0 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.52
Sequencing read coverage depth 142.4x
# of contigs 598
# of scaffolds 549
# of scaffolds >= 2Kbp 455
Scaffold N50 50
Scaffold L50 (Mbp) 0.19
# of gaps 49
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.77, 0.74, 0.74


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 42279 41601 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1813 1557
transcript 1484 1265
exon 258 155
intron 71 60
description:
protein length (aa) 416 342
exons per gene 5.75 4
# of gene models 13763


Collaborators

Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.