Info • Jahnula aquatica CBS 123560 v1.0

Status

[November 2018] The Jahnula aquatica CBS 123560 genome was sequenced using Illumina technology and assembled together with SPAdes v3.12.0. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Jahnula aquatica v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.56
Sequencing read coverage depth 127.3x
# of contigs 269
# of scaffolds 232
# of scaffolds >= 2Kbp 227
Scaffold N50 38
Scaffold L50 (Mbp) 0.35
# of gaps 37
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.10, 1.04, 1.03


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42204 40123 95.1%
Ests est.fasta 116449742 103568316 88.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1807 1578
transcript 1649 1439
exon 571 363
intron 86 60
description:
protein length (aa) 475 396
exons per gene 2.89 2
# of gene models 15525


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.