Status
Assembly v1.0 (June 2009) The assembly release version 1.0 of whole shotgun reads was constructed with the Arachne assembler using paired end sequencing reads at a coverage of 8.23x.
Annotation v1.0 (June 2009) of the v1.0 assembly was produced by the JGI Annotation Pipeline, using a variety of homology-based and ab initio gene predictors. After filtering for homology support, a total of 12,270 genes were structurally and functionally annotated.
| Main genome scaffold total | 39 |
| Main genome contig total | 630 |
| Main genome scaffold sequence total | 33.7 MB |
| Main genome contig sequence total | 33.1 MB (<1.9% gaps) |
| Main genome scaffold N/L50 | 6/2.2 MB |
| Number of scaffolds > 50 KB | 18 |
| % main genome in scaffolds > 50 KB | 99.7% |
| Number of EST cluster consensi | 10,126 |
| Number of ESTs | 40,807 |
Collaborators
- Jan Stenlid Swedish University of Agricultural Sciences, Uppsala, Sweden
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Olson Å, Aerts A, Asiegbu F, Belbahri L, Bouzid O, Broberg A, Canbäck B, Coutinho PM, Cullen D, Dalman K, Deflorio G, van Diepen LTA, Dunand C, Duplessis S, Durling M, Gonthier P, Grimwood J, Fossdal CG, Hansson D, Henrissat B, Hietala A, Himmelstrand K, Hoffmeister D, Högberg N, James TY, Karlsson M, Kohler A, Kües U, Lee YH, Lin YC, Lind M, Lindquist E, Lombard V, Lucas S, Lundén K, Morin E, Murat C, Park J, Raffaello T, Rouzé P, Salamov A, Schmutz J, Solheim H, Ståhlberg J, Vélëz H, de Vries RP, Wiebenga A, Woodward S, Yakovlev I, Garbelotto M, Martin F, Grigoriev IV, Stenlid J
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.
New Phytol. 2012 Jun;194(4):1001-1013. doi: 10.1111/j.1469-8137.2012.04128.x
Olson Å, Aerts A, Asiegbu F, Belbahri L, Bouzid O, Broberg A, Canbäck B, Coutinho PM, Cullen D, Dalman K, Deflorio G, van Diepen LTA, Dunand C, Duplessis S, Durling M, Gonthier P, Grimwood J, Fossdal CG, Hansson D, Henrissat B, Hietala A, Himmelstrand K, Hoffmeister D, Högberg N, James TY, Karlsson M, Kohler A, Kües U, Lee YH, Lin YC, Lind M, Lindquist E, Lombard V, Lucas S, Lundén K, Morin E, Murat C, Park J, Raffaello T, Rouzé P, Salamov A, Schmutz J, Solheim H, Ståhlberg J, Vélëz H, de Vries RP, Wiebenga A, Woodward S, Yakovlev I, Garbelotto M, Martin F, Grigoriev IV, Stenlid J
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.
New Phytol. 2012 Jun;194(4):1001-1013. doi: 10.1111/j.1469-8137.2012.04128.x
Funding
This work was performed under the auspices of the US Department of
Energy's Office of Science, Biological and Environmental Research
Program, and by the University of California, Lawrence Berkeley
National Laboratory under contract No. DE-AC02-05CH11231, Lawrence
Livermore National Laboratory under Contract No. DE-AC52-07NA27344,
and Los Alamos National Laboratory under contract No.
DE-AC02-06NA25396.
