Info • Hebeloma cylindrosporum h7 v1.0
Please note that this organism is for archival use only. Please see the current Hebeloma cylindrosporum h7 v2.0 site for the latest data and information.

Status

Assembly v1 (March 2011) is a draft assembly of 454 and Sanger gDNA reads and shredded Velvet contigs. The latter were assembled from Solexa gDNA reads. A total of 222 scaffolds and 37.6 Mbp were assembled using Newbler and improved using gapResolution.

Summary statistics for the Hebeloma cylindrosporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 37.61
Sequencing read coverage depth 34.47x
# of contigs 698
# of scaffolds 222
# of scaffolds >= 2Kbp 222
Scaffold N50 12
Scaffold L50 (Mbp) 1.00
# of gaps 476
% of scaffold length in gaps 1.9%
Three largest Scaffolds (Mbp) 3.32, 2.48, 1.76


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests NCBI_Sanger_ESTs 4318 4060 94.0%
Other JGI_Combest_assemblies 108230 105038 97.1%
Other JGI_Rnnotator_contigs 38472 36540 95.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1605 1318
transcript 1335 1083
exon 264 160
intron 69 58
description:
protein length (aa) 365 284
exons per gene 5.05 4
# of gene models 16841


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.