Info • Hansenula polymorpha NCYC 495 leu1.1 (ATCC MYA-335)
v1.0 (Apr 2010):The Hansenula polymorpha NCYC 495 leu1.1 hybrid draft release genome sequence assembly v1.0 was built with the Newbler assembler using whole genome shotgun and paired end sequencing reads combined from Sanger and Roche/454 sequencing technologies. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.
| Nuclear Genome Assembly | |
| Nuclear genome size(Mbp) | 9.0 |
| Sequencing read coverage depth | 60.49x |
| Reported # of contigs | 82 |
| # of nuclear scaffolds | 18 |
| # of nuclear scaffolds >2 Kb | 18 |
| Nuclear scaffold N/L50 | 7 / 0.4 Mbp |
| % scaffold in gaps | 0.8 % |
| Three largest Scaffolds (Mbp) |
1.5 1.5 1.4 |
| Gene Models | v1.01 | v1.01 |
| length (bp) of: | average | median |
| gene | 1780 | 1391 |
| transcript | 1734 | 1375 |
| exon | 1432 | 1132 |
| intron | 220 | 48 |
| description: | ||
| protein length (aa) | 437 | 371 |
| exons per gene | 1.21 | 1 |
| # of genes | 5284 | 5284 |
1Filteredmodels5 gene model set;
see Browse page track info for modeling descrepancies in UTR overprediction.
| ESTs | Data set | # sequences | # mapped to genome | # not mapped to genome | % mapped to genome |
| EST clusters | Hanpo1_EstClusters | 5,162 | 4,955 | 4% | 96% |
| Hanpo1_ESTs | 887,515 | 848,626 | 4% | 96% |
Sybirny A.A.,PhD,Professor
Chair, International Commission on Yeasts
Chair, International Commission on Yeasts
Corresponding Member of NAS of Ukraine
Director, Institute of Cell Biology, NAS of Ukraine,
Head, Department of Molecular Genetics and Biotechnology
President, Ukrainian Society for Cell Biology
Drahomanov Street, 14/16, Lviv 79005 Ukraine
Phone: 00 380 32 261 2108; 00 380 32 261 2163;
FAX 00 380 32 261 2148.
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
