Status
June 2014. The Gymnopilus chrysopellus PR-1187 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al. 2010).
Summary statistics for the Gymnopilus chrysopellus PR-1187
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 47.22 |
| Sequencing read coverage depth | 142.5 |
| # of contigs | 2046 |
| # of scaffolds | 1949 |
| # of scaffolds >= 2Kbp | 1537 |
| Scaffold N50 | 210 |
| Scaffold L50 (Mbp) | 0.06 |
| # of gaps | 97 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.36, 0.30, 0.28 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 57047 | 56249 | 98.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1705 | 1441 |
| transcript | 1393 | 1170 |
| exon | 253 | 149 |
| intron | 71 | 58 |
| description: | ||
| protein length (aa) | 405 | 330 |
| exons per gene | 5.51 | 4 |
| # of gene models | 18193 |
Collaborators
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
