Info • Fibulorhizoctonia psychrophila CBS 109695 v1.0

Status

Dec 2013. The Fibulorhizoctonia psychrophila CBS 109695 genome was sequenced using the Illumina platform and subsequently assembled with AllPathsLG release version R44008 (Gnerre et al., 2010) to produce an assembly that was used as input to PBJelly for PacBio patching. The genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Fibulorhizoctonia psychrophila CBS 109695 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 95.13
Sequencing read coverage depth 30.5
# of contigs 3901
# of scaffolds 1918
# of scaffolds >= 2Kbp 1319
Scaffold N50 98
Scaffold L50 (Mbp) 0.29
# of gaps 1983
% of scaffold length in gaps 6.2%
Three largest Scaffolds (Mbp) 1.75, 1.23, 0.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 129088 115676 89.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1469 1117
transcript 1125 894
exon 243 154
intron 97 58
description:
protein length (aa) 334 254
exons per gene 4.63 3
# of gene models 32946


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Nagy LG, Riley R, Tritt A, Adam C, Daum C, Floudas D, Sun H, Yadav JS, Pangilinan J, Larsson KH, Matsuura K, Barry K, Labutti K, Kuo R, Ohm RA, Bhattacharya SS, Shirouzu T, Yoshinaga Y, Martin FM, Grigoriev IV, Hibbett DS
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities.
Mol Biol Evol. 2016 Apr;33(4):959-70. doi: 10.1093/molbev/msv337

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.