Info • Crassisporium funariophilum CBS 144457 v1.0

Status

[June 2017] The Crassisporium funariophilum CBS 144457 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Crassisporium funariophilum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.12
Sequencing read coverage depth 120.54x
# of contigs 41
# of scaffolds 41
# of scaffolds >= 2Kbp 41
Scaffold N50 7
Scaffold L50 (Mbp) 2.16
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.78, 3.47, 3.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58765 56192 95.6%
Ests est.fasta 146639692 145973520 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1763 1492
transcript 1440 1209
exon 240 146
intron 67 58
description:
protein length (aa) 418 333
exons per gene 5.99 5
# of gene models 13637


Collaborators

  • Tom Bruns at University of California Berkeley

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.