Info • Coprinopsis marcescibilis CBS121175 v1.0

Status

(Dec 2015) The Coprinopsis marcescibilis CBS121175 genome was sequenced using Illumina and assembled with Velvet.

Summary statistics for the Coprinopsis marcescibilis CBS121175 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.91
Sequencing read coverage depth 94.4x
# of contigs 1269
# of scaffolds 817
# of scaffolds >= 2Kbp 710
Scaffold N50 75
Scaffold L50 (Mbp) 0.13
# of gaps 452
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 1.44, 1.29, 0.56


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33743 32968 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1780 1510
transcript 1470 1219
exon 259 157
intron 69 58
description:
protein length (aa) 429 343
exons per gene 5.66 4
# of gene models 14632


Collaborators

László Nagy, Hungarian Academy of Sciences

Joseph W. Spatafora, Oregon State University

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.