Info • Coniochaeta sp. PMI_546 v1.0

Status

Assembly v1 (May 2014) is a standard draft assembly of Illumina gDNA reads. A total of 37 scaffolds and 33.5 Mbp were assembled using AllPathsLG.

Summary statistics for the Coniochaeta sp. PMI_546 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.51
Sequencing read coverage depth 102x
# of contigs 68
# of scaffolds 37
# of scaffolds >= 2Kbp 27
Scaffold N50 5
Scaffold L50 (Mbp) 2.74
# of gaps 31
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 4.34, 3.64, 3.26


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 31533 30866 97.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1813 1571
transcript 1655 1424
exon 620 386
intron 96 66
description:
protein length (aa) 468 385
exons per gene 2.67 2
# of gene models 11346


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.