Info • Aureobasidium pullulans var. pullulans EXF-150

Status

March 2013. The genome of Aureobasidium pullulans EXF-150 was sequenced using Illumina technology and assembled using AllPathsLG (R38445).

Summary statistics for the Aureobasidium pullulans EXF-150 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.62
Sequencing read coverage depth 172.5x
# of contigs 209
# of scaffolds 186
# of scaffolds >= 2Kbp 103
Scaffold N50 10
Scaffold L50 (Mbp) 1.17
# of gaps 23
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.69, 2.12, 1.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator-assembled Illumina ESTs 27547 25427 92.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1629 1399
transcript 1512 1297
exon 609 369
intron 81 57
description:
protein length (aa) 444 369
exons per gene 2.48 2
# of gene models 11866


Collaborators

  • Prof. Dr. Nina Gunde-Cimerman, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Cene Gostincar, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Tina Kogej, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Silva Sonjak, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Martina Turk,University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Polona Zalar,University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.