Info • Aspergillus sclerotiorum CBS 549.65 v1.0

Status

[July 2016] The Aspergillus sclerotiorum CBS 549.65 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus sclerotiorum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.97
Sequencing read coverage depth 68.2x
# of contigs 358
# of scaffolds 335
# of scaffolds >= 2Kbp 296
Scaffold N50 42
Scaffold L50 (Mbp) 0.27
# of gaps 23
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.65, 0.95, 0.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32118 31422 97.8%
Ests est.fasta 60187788 56484008 93.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1844 1574
transcript 1668 1414
exon 530 320
intron 84 64
description:
protein length (aa) 463 379
exons per gene 3.15 3
# of gene models 12620


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.