Info • Aspergillus ochraceoroseus IBT 24754 v1.0

Status

Assembly v1 (January 2014) is a minimal draft assembly of PacBio gDNA reads. A total of 34 scaffolds and 27.7 Mbp were assembled using HBAR.

Summary statistics for the Aspergillus ochraceoroseus IBT 24754 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.72
Sequencing read coverage depth 26.40x
# of contigs 34
# of scaffolds 34
# of scaffolds >= 2Kbp 32
Scaffold N50 4
Scaffold L50 (Mbp) 2.49
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.37, 4.33, 2.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 27551 27004 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1835 1563
transcript 1625 1388
exon 504 287
intron 96 67
description:
protein length (aa) 474 390
exons per gene 3.23 3
# of gene models 8924


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.