Info • Aspergillus homomorphus CBS 101889 v1.0

Status

Assembly v1 (Jul 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus homomorphus CBS 101889 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.05
Sequencing read coverage depth 96.6x
# of contigs 208
# of scaffolds 152
# of scaffolds >= 2Kbp 140
Scaffold N50 19
Scaffold L50 (Mbp) 0.54
# of gaps 56
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.00, 1.56, 1.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 18452 18277 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1833 1564
transcript 1624 1382
exon 504 300
intron 96 65
description:
protein length (aa) 470 386
exons per gene 3.22 3
# of gene models 11361


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.