Info • Aspergillus brunneoviolaceus CBS 621.78 v1.0

Status

Assembly v1 (Jul 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus brunneoviolaceus CBS 621.78 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.48
Sequencing read coverage depth 106.5x
# of contigs 218
# of scaffolds 153
# of scaffolds >= 2Kbp 152
Scaffold N50 34
Scaffold L50 (Mbp) 0.41
# of gaps 65
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.90, 0.88, 0.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 30466 30331 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1824 1563
transcript 1619 1388
exon 513 308
intron 97 66
description:
protein length (aa) 468 390
exons per gene 3.16 3
# of gene models 12075


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.