Status
The Aplanochytrium kerguelense genome was sequenced using the Solexa and Sanger sequencing platforms and assembled with Arachne.
Summary statistics for the Aplanochytrium kerguelense
PBS07 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 35.77 |
| Sequencing read coverage depth | 108.40x |
| # of contigs | 523 |
| # of scaffolds | 207 |
| # of scaffolds >= 2Kbp | 130 |
| Scaffold N50 | 19 |
| Scaffold L50 (Mbp) | 0.72 |
| # of gaps | 316 |
| % of scaffold length in gaps | 4.0% |
| Three largest Scaffolds (Mbp) | 1.53, 1.26, 1.20 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | JGI_454_ESTs | 1356658 | 1325807 | 97.7% |
| Other | JGI_Newbler_EST_contigs | 12623 | 12402 | 98.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1521 | 1291 |
| transcript | 1400 | 1187 |
| exon | 508 | 307 |
| intron | 71 | 55 |
| description: | ||
| protein length (aa) | 418 | 344 |
| exons per gene | 2.75 | 2 |
| # of gene models | 11892 |
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
