Info • Aliquandostipite khaoyaiensis CBS 118232 v1.0

Status

[March 2017] The Aliquandostipite khaoyaiensis CBS 118232 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aliquandostipite khaoyaiensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 119.52
Sequencing read coverage depth 125.82x
# of contigs 1759
# of scaffolds 1759
# of scaffolds >= 2Kbp 1740
Scaffold N50 311
Scaffold L50 (Mbp) 0.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.61, 0.61, 0.53


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 56050 50525 90.1%
Ests est.fasta 124045366 118505929 95.5%


Gene Models FilteredModels3
length (bp) of: average median
gene 1660 1392
transcript 1475 1218
exon 455 262
intron 84 59
description:
protein length (aa) 437 345
exons per gene 3.24 3
# of gene models 11678


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.