Info • Abortiporus biennis ​CIRM-BRFM 1778 v1.0

Status

[July 2017] The Abortiporus biennis CIRM-BRFM1778 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Abortiporus biennis CIRM-BRFM 1778 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.12
Sequencing read coverage depth 49.44x
# of contigs 73
# of scaffolds 73
# of scaffolds >= 2Kbp 72
Scaffold N50 16
Scaffold L50 (Mbp) 0.72
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.16, 1.89, 1.19


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55222 54073 97.9%
Ests est.fasta 115172717 114029440 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1897 1654
transcript 1533 1330
exon 239 145
intron 69 61
description:
protein length (aa) 447 370
exons per gene 6.41 5
# of gene models 11767


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.