Takifugu (Fugu) rubripes v3.0
Please note that this organism is for archival use only. Please see the current Takifugu (Fugu) rubripes v4.0 site for the latest data and information.

 
Assembly v4.0 (October 2004)
All files are in FASTA format and compressed with gzip.
  Unmasked assembly data: fugu.041029.scaffolds.fasta.gz
 

Assembly v3.0 (August 2002)

All files are in FASTA format and compressed with Zip.

 

 

Unmasked assembly data: fugu_v3.fasta.gz (92985 Kb)

Masked assembly data: fugu_v3_mask.fasta.gz (89645 Kb)

Protein sequence data: fugu_v3_prot.fasta.Z (6555 Kb)

Transcriptome sequence data: fugu_v3_trans.fasta.Z (9100 Kb)

 

Reads

 

All files are in FASTA format and compressed with gzip.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

   
JGI library and quality value files (~2 Kb library insert size):
    libraryLPO.fasta.gz (58922 Kb), libraryLPO.fasta.qual.gz (111167 Kb)
    libraryMBF.1.fasta.gz (198786 Kb), libraryMBF.1.fasta.qual.gz (392642 Kb)
    libraryMBF.2.fasta.gz (217327 Kb), libraryMBF.2.fasta.qual.gz (426832 Kb)
    libraryNFP.fasta.gz (79752 Kb), libraryNFP.fasta.qual.gz (155263 Kb)
    libraryXLP.fasta.gz (15408 Kb), libraryXLP.fasta.qual.gz (31219 Kb)
   
Celera library and quality value files (~2 Kb library insert size):
    libraryCRA.fasta.gz (32222 Kb), libraryCRA.fasta.qual.gz (81462 Kb)
   
Myriad library and quality value files (~2 Kb library insert size):
    libraryMYR.fasta.gz (150143 Kb), libraryMYR.fasta.qual.gz (372814 Kb)
    libraryMYR2.fasta.gz (52668 Kb), libraryMYR2.fasta.qual.gz (129911 Kb)
   
Los Alamos National Labs BAC-ends and quality value files (~80 Kb library insert size):
    libraryOML.fasta.gz (16269 Kb), libraryOML.fasta.qual.gz (31247 Kb)
   
Los Alamos National Labs cosmid-ends and quality value files (~40 Kb library insert size):
    libraryLPC.fasta.gz (25173 Kb), libraryLPC.fasta.qual.gz (44946 Kb)