Schizophyllum commune H4-8 v3.0
TRANSCRIPT ANNOTATION 
Schco3/scaffold_1:342895-343920 fgenesh1_kg.1_#_389_#_Locus2844v1rpkm58.58 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Deflinehypothetical proteinAUTOMATIC 
DispositionCatalogAUTOMATIC 
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 2604560
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
3677  Interacting selectively with DNA (deoxyribonucleic acid).IPR000684  RNA polymerase II, heptapeptide repeat, eukaryotic 
process
6366  The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).IPR000684  RNA polymerase II, heptapeptide repeat, eukaryotic 
component
5665  RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.IPR000684  RNA polymerase II, heptapeptide repeat, eukaryotic 

High Scoring Alignments 

gi|302691594|ref|XP_003035476.1|
hypothetical protein SCHCODRAFT_14640 [Schizophyllum commune H4-8] >gi|300109172|gb|EFJ00574.1| hypothetical protein SCHCODRAFT_14640 [Schizophyllum commune H4-8]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
1112
0.0
100%
100%
100%

gi|390598533|gb|EIN07931.1|
hypothetical protein PUNSTDRAFT_121105 [Punctularia strigosozonata HHB-11173 SS5]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
592
0.0
50%
100%
100%

gi|392596276|gb|EIW85599.1|
hypothetical protein CONPUDRAFT_118533 [Coniophora puteana RWD-64-598 SS2]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
591
0.0
50%
100%
99%

gi|336368028|gb|EGN96372.1|
hypothetical protein SERLA73DRAFT_186099 [Serpula lacrymans var. lacrymans S7.3] >gi|336380757|gb|EGO21910.1| hypothetical protein SERLADRAFT_474963 [Serpula lacrymans var. lacrymans S7.9]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
588
0.0
49%
100%
100%

gi|170093866|ref|XP_001878154.1|
predicted protein [Laccaria bicolor S238N-H82] >gi|164646608|gb|EDR10853.1| predicted protein [Laccaria bicolor S238N-H82]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
558
0.0
48%
97%
97%

gi|389741200|gb|EIM82389.1|
hypothetical protein STEHIDRAFT_124526 [Stereum hirsutum FP-91666 SS1]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
556
0.0
45%
100%
100%

gi|395330369|gb|EJF62753.1|
hypothetical protein DICSQDRAFT_135714 [Dichomitus squalens LYAD-421 SS1]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
537
0.0
47%
100%
100%

gi|392567781|gb|EIW60956.1|
hypothetical protein TRAVEDRAFT_58002 [Trametes versicolor FP-101664 SS1]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
535
0.0
46%
98%
98%

gi|393215504|gb|EJD00995.1|
hypothetical protein FOMMEDRAFT_135268 [Fomitiporia mediterranea MF3/22]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
499
0.0
45%
98%
97%

gi|393212051|gb|EJC97581.1|
hypothetical protein FOMMEDRAFT_130419 [Fomitiporia mediterranea MF3/22]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
407
4.70543E-32
35%
94%
92%