Info • Tricholoma matsutake 945 v3.0

Status

Assembly v1 (February 2013) is an improved draft assembly. A total of 2546 scaffolds and 175.8 Mbp were assembled from Solexa gDNAs using AllPathsLG and improved with PacBio reads using PBJelly.

Summary statistics for the Tricholoma matsutake 945 v3.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 175.76
Sequencing read coverage depth 100.4x
# of contigs 16714
# of scaffolds 2546
# of scaffolds >= 2Kbp 1955
Scaffold N50 167
Scaffold L50 (Mbp) 0.32
# of gaps 14168
% of scaffold length in gaps 13.5%
Three largest Scaffolds (Mbp) 1.32, 1.29, 1.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 66184 54986 83.1%


Gene Models FilteredModels2
length (bp) of: average median
gene 1206 815
transcript 947 666
exon 235 155
intron 87 56
description:
protein length (aa) 274 178
exons per gene 4.03 2
# of gene models 22885


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.