Trametes versicolor v1.0

Status

v1.0 (November, 2010): The assembly release version 1.0 of Trametes versicolor was generated using the Newbler and Velvet assemblers and Roche 454, Illumina Solexa and Fosmid Sanger input data.

Summary statistics for the Trametes versicolor v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 44.79
Sequencing read coverage depth 40.27
# of contigs 1443
# of scaffolds 283
# of scaffolds >= 2Kbp 283
Scaffold N50 7
Scaffold L50 (Mbp) 2.88
# of gaps 580
% of scaffold length in gaps 4.3%
Three largest Scaffolds (Mbp) 5.13, 4.00, 3.86


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs_avicel_media 821682 791660 96.3%
Ests ESTs_full_media_A 1352636 1307690 96.7%
Other Clusters 12804 11931 93.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1790 1491
transcript 1400 1169
exon 241 145
intron 83 59
description:
protein length (aa) 422 353
exons per gene 5.81 4
# of gene models 14296


Collaborators

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.