Syncephalis plumigaleata NRRL S24 v1.0

Status

[October 2016] The Syncephalis plumigaleata NRRL S24 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Syncephalis plumigaleata NRRL S24 was identified to be at least a diploid. Therefore we have created 'primary' and 'secondary' allele gene model tracks in the genome browser, as well as provided downloadable files and BLAST databases for these allelic variants.

Summary statistics for the Syncephalis plumigaleata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.91
Sequencing read coverage depth 143.79x
# of contigs 438
# of scaffolds 438
# of scaffolds >= 2Kbp 433
Scaffold N50 12
Scaffold L50 (Mbp) 0.74
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.05, 2.35, 1.95


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46875 41468 88.5%
Ests est.fasta 136186282 134091808 98.5%


Gene Models FilteredModels2
length (bp) of: average median
gene 1785 1515
transcript 1426 1219
exon 250 146
intron 79 68
description:
protein length (aa) 408 326
exons per gene 5.70 4
# of gene models 8130


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Matthew Smith, University of Florida, USA

 

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.