Info • Suillus luteus UH-Slu-Lm8-n1 v3.0

Status

[June 2017] Assembly v3 (April 2017) is a improved draft assembly of PacBio gDNA reads using Falcon and finisherSC.

Summary statistics for the Suillus luteus UH-Slu-Lm8-n1 v3.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.49
Sequencing read coverage depth 80.09x
# of contigs 67
# of scaffolds 67
# of scaffolds >= 2Kbp 67
Scaffold N50 10
Scaffold L50 (Mbp) 1.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.59, 2.96, 2.89


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 209233321 204069871 97.5%
Other JGI_RNA_contigs 43774 41382 94.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1602 1322
transcript 1310 1057
exon 235 150
intron 66 55
description:
protein length (aa) 384 300
exons per gene 5.57 4
# of gene models 16588


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canbäck B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Doré J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Högberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A, Tunlid A, Grigoriev IV, Hibbett DS, Martin F
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Nat Genet. 2015 Apr;47(4):410-5. doi: 10.1038/ng.3223

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.