Schizophyllum commune v1.0
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Please note that this organism is for archival use only. Please see the current Schizophyllum commune H4-8 v3.0 site for the latest data and information.

Status

v.1.0 (March,2009): The assembly release version 1.0 of whole genome shotgun reads was constructed with Arachne, using paired end sequencing reads at an average coverage of ~8.29X. After trimming for vector and quality, 506,140 reads assembled into 36 main genome scaffolds totaling 38.5 MB. Roughly half of the genome is contained in 5 scaffolds all at least 2.5 MB in length.

The current draft release, version 1.0, includes a total of 13,181 gene models predicted and functionally annotated using the JGI annotation pipeline.

Collaborators

  • Friedrich-Schiller University, Germany (Erika Kothe)
  • Pacific Northwest National Laboratory, WA, USA (Vanessa Bailey, Scott Baker, Jon Magnuson)
  • Southeast Missouri State University, MO, USA (Walt Lilly, Allen Gathman)
  • Southern Illinois University at Edwardsville, IL, USA (Tom Fowler)
  • Union College, NY, USA (Stephen Horton)
  • Universiteit Utrecht, The Netherlands (Luis Lugones, Han Wosten)

References

Ohm RA, Jong JF, Lugones LG, Aerts A, Kothe E, Stajich JE, de Vries RP, RecordE, Levasseur A, Baker SE, Bartholomew KA, Coutinho PM, Erdmann S, Fowler TJ, Gathman AC, Lombard V, Henrissat B, Knabe N, Kües U, Lilly WW, Lindquist E, Lucas S, Magnuson JK, Piumi F, Raudaskoski M, Salamov A, Schmutz J, Schwarze FWMR, vanKuyk PA, Horton JS, Grigoriev IV, Wösten HA The genome of the choanoflagellate. Nature. 2008 Feb 14;451(7180):783-8.

">Genome sequence of the model mushroom Schizophyllum commune.

Nature Biotech. 2010 Sep;28(9):957-63

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