Info • Rhodosporidium toruloides ATCC26217 v1.0

Status

[June 2016] The Rhodosporidium toruloides ATCC 26217 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline.

Summary statistics for the Rhodosporidium toruloides ATCC26217 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.21
Sequencing read coverage depth 101.1x
# of contigs 186
# of scaffolds 174
# of scaffolds >= 2Kbp 145
Scaffold N50 22
Scaffold L50 (Mbp) 0.29
# of gaps 12
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.03, 0.82, 0.74


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 247631930 241157392 97.4%
Ests Trinity_assembled_Illumina_ESTs 26039 24851 95.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2126 1781
transcript 1726 1423
exon 281 170
intron 80 64
description:
protein length (aa) 510 403
exons per gene 6.14 5
# of gene models 8226


Collaborators

John Gladden, Joint Bioenergy Institute (JBEI)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.