Info • Rhizopogon vinicolor AM-OR11-026 v1.0

Status

Assembly v1 (May 2014) is a minimal draft assembly of Illumina gDNA reads. A total of 2310 scaffolds and 36.1 Mbp were assembled using first Velvet and then AllPathsLG.

Summary statistics for the Rhizopogon vinicolor AM-OR11-026 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.10
Sequencing read coverage depth 153.7x
# of contigs 3018
# of scaffolds 2310
# of scaffolds >= 2Kbp 1633
Scaffold N50 218
Scaffold L50 (Mbp) 0.04
# of gaps 708
% of scaffold length in gaps 2.3%
Three largest Scaffolds (Mbp) 0.56, 0.30, 0.26


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 41449 35478 85.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1595 1297
transcript 1274 1030
exon 228 143
intron 72 55
description:
protein length (aa) 362 282
exons per gene 5.58 4
# of gene models 14469


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.