Info • Rhizopus microsporus var. microsporus ATCC52814 v1.0

Status

[April 2015] The Rhizopus microsporus var. microsporus ATCC52814 genome was sequenced using the Illumina platform and assembled together with Velvet (Zerbino and Birney, 2008) and AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rhizopus microsporus var. microsporus ATCC52814 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 24.95
Sequencing read coverage depth 142.8x
# of contigs 649
# of scaffolds 560
# of scaffolds >= 2Kbp 473
Scaffold N50 71
Scaffold L50 (Mbp) 0.11
# of gaps 89
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.42, 0.36, 0.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests Trinity_assembled_Illumina_ESTs 68968 42995 62.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1400 1152
transcript 1220 987
exon 317 192
intron 65 56
description:
protein length (aa) 362 282
exons per gene 3.85 3
# of gene models 11502


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.