Info • Radiomyces spectabilis NRRL 2753 v1.0

Status

[November 2016] The Radiomyces spectabilis RSA627 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Radiomyces spectabilis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.41
Sequencing read coverage depth 245.83x
# of contigs 36
# of scaffolds 36
# of scaffolds >= 2Kbp 36
Scaffold N50 7
Scaffold L50 (Mbp) 1.93
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.08, 2.86, 2.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42608 40791 95.7%
Ests est.fasta 135463403 134808106 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1750 1476
transcript 1430 1186
exon 292 175
intron 84 72
description:
protein length (aa) 409 325
exons per gene 4.90 4
# of gene models 10905


Collaborators

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State, Oregon

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, Tritt A, Keymanesh K, Yan M, Barry K, Grigoriev IV, Spatafora JW, Stajich JE
Divergent evolution of early terrestrial fungi reveals the evolution of Mucormycosis pathogenicity factors.
Genome Biol Evol. 2023 Mar 17;():. doi: 10.1093/gbe/evad046

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.