Status
(Jun 2015) The Pleurotus eryngii IJFM A732 (=ATCC 90797) genome was sequenced using the Illumina platform, and assembled with AllPathsLG version R49403.
Summary statistics for the Pleurotus eryngii v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 44.61 |
| Sequencing read coverage depth | 96.7x |
| # of contigs | 1684 |
| # of scaffolds | 609 |
| # of scaffolds >= 2Kbp | 487 |
| Scaffold N50 | 54 |
| Scaffold L50 (Mbp) | 0.24 |
| # of gaps | 1075 |
| % of scaffold length in gaps | 3.0% |
| Three largest Scaffolds (Mbp) | 1.22, 1.02, 0.83 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 48628 | 47548 | 97.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1621 | 1340 |
| transcript | 1318 | 1077 |
| exon | 236 | 148 |
| intron | 68 | 57 |
| description: | ||
| protein length (aa) | 379 | 300 |
| exons per gene | 5.59 | 4 |
| # of gene models | 15960 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ruiz-Dueñas FJ, Barrasa JM, Sánchez-García M, Camarero S, Miyauchi S, Serrano A, Linde D, Babiker R, Drula E, Ayuso-Fernández I, Pacheco R, Padilla G, Ferreira P, Barriuso J, Kellner H, Castanera R, Alfaro M, Ramírez L, Pisabarro AG, Riley R, Kuo A, Andreopoulos W, LaButti K, Pangilinan J, Tritt A, Lipzen A, He G, Yan M, Ng V, Grigoriev IV, Cullen D, Martin F, Rosso MN, Henrissat B, Hibbett D, Martínez AT
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity.
Mol Biol Evol. 2021 Apr 13;38(4):1428-1446. doi: 10.1093/molbev/msaa301
Ruiz-Dueñas FJ, Barrasa JM, Sánchez-García M, Camarero S, Miyauchi S, Serrano A, Linde D, Babiker R, Drula E, Ayuso-Fernández I, Pacheco R, Padilla G, Ferreira P, Barriuso J, Kellner H, Castanera R, Alfaro M, Ramírez L, Pisabarro AG, Riley R, Kuo A, Andreopoulos W, LaButti K, Pangilinan J, Tritt A, Lipzen A, He G, Yan M, Ng V, Grigoriev IV, Cullen D, Martin F, Rosso MN, Henrissat B, Hibbett D, Martínez AT
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity.
Mol Biol Evol. 2021 Apr 13;38(4):1428-1446. doi: 10.1093/molbev/msaa301
Links
Agaricomycotina homepage on Mycocosm
Pleurotus ostreatus PC15 on Mycocosm
Pleurotus ostreatus PC9 on Mycocosm
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
