Info • Pilobolus umbonatus NRRL 6349 v1.0

Status

[March 2017] The Pilobolus umbonatus NRRL 6349 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline.

Summary statistics for the Pilobolus umbonatus NRRL 6349 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.77
Sequencing read coverage depth 326.04x
# of contigs 496
# of scaffolds 496
# of scaffolds >= 2Kbp 492
Scaffold N50 20
Scaffold L50 (Mbp) 0.42
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.83, 1.46, 1.46


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49112 45667 93.0%
Ests est.fasta 217895696 216729090 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1596 1354
transcript 1340 1110
exon 297 175
intron 75 60
description:
protein length (aa) 391 309
exons per gene 4.51 4
# of gene models 10983


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience. 2022 Aug 19;25(8):104840. doi: 10.1016/j.isci.2022.104840

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.