Pilaira anomala RSA1997 v1.0
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Status

[January 2017] The Pilaira anomala RSA1997 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pilaira anomala RSA1997 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.90
Sequencing read coverage depth 151.59x
# of contigs 359
# of scaffolds 359
# of scaffolds >= 2Kbp 343
Scaffold N50 27
Scaffold L50 (Mbp) 0.38
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.31, 0.98, 0.86


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36283 32734 90.2%
Ests est.fasta 167461011 163626164 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1552 1300
transcript 1296 1059
exon 326 186
intron 88 70
description:
protein length (aa) 390 310
exons per gene 3.97 3
# of gene models 12817


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.