Status
Version 1, March 2011. This draft assembly was produced using Roche (454), Sanger Fosmid, and shredded consensus from velvet assembled illumina data.
Summary statistics for the Pichia membranifaciens v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 11.50 |
| Sequencing read coverage depth | 38.95 |
| # of contigs | 143 |
| # of scaffolds | 11 |
| # of scaffolds >= 2Kbp | 11 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 2.00 |
| # of gaps | 66 |
| % of scaffold length in gaps | 1.6% |
| Three largest Scaffolds (Mbp) | 2.96, 2.68, 2.00 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | MERGED | 7121 | 7091 | 99.6% |
| Other | OASES | 7613 | 7577 | 99.5% |
| Other | RNNOTATOR | 14619 | 14553 | 99.5% |
| Other | VELVET | 129020 | 125074 | 96.9% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1661 | 1367 |
| transcript | 1595 | 1328 |
| exon | 1223 | 1011 |
| intron | 221 | 114 |
| description: | ||
| protein length (aa) | 482 | 392 |
| exons per gene | 1.30 | 1 |
| # of gene models | 5363 |
Collaborators
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
