Physcomitrella patens subsp patens v1.1
On June 29, 2017 the JGI computer systems will be undergoing maintenance and access to certain files and tools will be affected. Sorry for the inconvenience.
For information on the most current version of this organism's data, click here: the Phytozome Physcomitrella site.

Download Data

Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip). To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.


Unmasked: Physcomitrella_patens.1_1.fasta.gz

Masked: Physcomitrella_patens.1_1.allmasked.gz


"Filtered Models" is the filtered set of models representing the best gene model for each locus. "All Models" represents all models generated for this genome which may include redundant model sets for each locus.

Filtered Models ("best")

Proteins: proteins.Phypa1_1.FilteredModels3.fasta.gz

Transcripts: transcripts.Phypa1_1.FilteredModels3.fasta.gz

gff: Phypa1_1.FilteredModels3.gff.gz

Functional Annotation

EC annotations and KEGG pathway mappings:

GO annotations:

KOG annotations:

InterPro domains:

All Models, Filtered and Not

Transcript fasta of ALL Phypa1_1 Models: transcripts.Phypa1_1.AllModels.fasta.gz

Protein fasta of ALL Phypa1_1 Models: proteins.Phypa1_1.AllModels.fasta.gz