Info • Mortierella humilis PMI_1414 v1.0

Status

[July 2017] The Mortierella humilis PMI_1414 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Mortierella humilis PMI_1414 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.20
Sequencing read coverage depth 86.56x
# of contigs 523
# of scaffolds 523
# of scaffolds >= 2Kbp 517
Scaffold N50 99
Scaffold L50 (Mbp) 0.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.46, 0.43, 0.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 212669575 189047420 88.9%
Other JGI_RNA_contigs 42326 33491 79.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1884 1604
transcript 1517 1239
exon 429 244
intron 147 102
description:
protein length (aa) 442 348
exons per gene 3.53 3
# of gene models 12012


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.