Status
The genome of Mortierella elongata was sequenced using Illumina technology and assembled using AllPathsLG (version R42328).
Summary statistics for the Mortierella elongata v1.0
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 49.96 |
Sequencing read coverage depth | 112.8x |
# of contigs | 3314 |
# of scaffolds | 473 |
# of scaffolds >= 2Kbp | 343 |
Scaffold N50 | 31 |
Scaffold L50 (Mbp) | 0.52 |
# of gaps | 2841 |
% of scaffold length in gaps | 2.5% |
Three largest Scaffolds (Mbp) | 1.53, 1.23, 1.20 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
Ests | RNNotator-assembled Illumina ESTs | 40340 | 35852 | 88.9% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1957 | 1678 |
transcript | 1499 | 1234 |
exon | 432 | 239 |
intron | 187 | 120 |
description: | ||
protein length (aa) | 451 | 360 |
exons per gene | 3.47 | 3 |
# of gene models | 14964 |
Collaborators
- Francis Martin, INRA Nancy, France
- Rytas Vilgalys, Duke University, USA
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.