Info • Lentinellus vulpinus AHS73672-sp v1.0

Status

(Aug 2015) The Lentinellus vulpinus AHS73672-sp genome was sequenced using Illumina and assembled together with AllPathsLG.

Summary statistics for the Lentinellus vulpinusAHS73672-sp v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.71
Sequencing read coverage depth 94.9x
# of contigs 1554
# of scaffolds 578
# of scaffolds >= 2Kbp 469
Scaffold N50 45
Scaffold L50 (Mbp) 0.20
# of gaps 976
% of scaffold length in gaps 4.0%
Three largest Scaffolds (Mbp) 1.71, 1.66, 0.59


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43797 42969 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1715 1442
transcript 1423 1190
exon 254 157
intron 65 58
description:
protein length (aa) 401 321
exons per gene 5.61 4
# of gene models 13477


Collaborators

Joseph Spatafora, Oregon State University

Laszlo Nagy, Clark University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.