Info • Laccaria bicolor v2.0

Status

Summary statistics for the Laccaria bicolor v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 60.71
# of contigs 584
# of scaffolds 55
# of scaffolds >= 2Kbp 55
Scaffold N50 5
Scaffold L50 (Mbp) 4.31
# of gaps 529
% of scaffold length in gaps 2.0%
Three largest Scaffolds (Mbp) 12.61, 7.96, 4.75


ESTs Data set # sequences total # mapped to genome % mapped to genome
EST Clusters Sanger EST Clusters 14312 9516 66.5%
ESTs Sanger ESTs 38901 30594 78.6%
EST Clusters 454 Clusters 10598 8958 84.5%
ESTs 454 ESTs 186230 87856 47.2%
EST Clusters Illumina Assembled RNAseq 89008 35406 39.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1549 1191
transcript 1163 876
exon 220 135
intron 92 57
description:
protein length (aa) 356 267
exons per gene 5.28 4
# of gene models 23132


Collaborators

Francis Martin, Ph.D., Tree-Microbe Interactions Department, INRA-Nancy

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.